After upgrading my project from 4.15.2 to 4.16, I started to receive this error while packaging for Android or Windows. I removed Intermediate and Binaries folders, but didn’t resolve the problem.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfModules/Core/UserInterface/MainMenu/PrivacyPolicy.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfContent/Sounds/starimpact.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfModules/Core/UserInterface/MainMenu/AreUSure.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfModules/Core/UserInterface/MainMenu/ModeSelectMenu.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogBlueprint:Warning: [AreUSure] 'BottomMainMenu' variable not found. Base class was probably changed.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfModules/Core/UserInterface/MainMenu/AreUSureAd.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfModules/Core/UserInterface/MainMenu/LockedMapWarning.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogBlueprint:Warning: [AreUSureAd] 'BottomMainMenu' variable not found. Base class was probably changed.
UATHelper: Packaging (Android (PVRTC)): Cook: LogLinker:Warning: Asset '../../../../../../Unreal Projects/SkateProject 4.16/Content/SurfModules/Core/UserInterface/MainMenu/UITexture/star_big.uasset' has been saved with empty engine version. The asset will be loaded but may be incompatible.
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: begin: stack for UAT
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: === Critical error: ===
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error:
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: Assertion failed: Result [File:D:\Build\++UE4+Release-4.16+Compile\Sync\Engine\Source\Editor\UnrealEd\Private\Kismet2\BlueprintEditorUtils.cpp] [Line: 2171]
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error:
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error:
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error:
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: KERNELBASE.dll!0x0000000018161F28
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-Core.dll!0x00000000F21A00AE
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-Core.dll!0x00000000F1FB30DF
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-Core.dll!0x00000000F1F42CC9
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-UnrealEd.dll!0x00000000EF594DDF
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-BlueprintGraph.dll!0x00000000E9BCC0D9
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7EC00F9
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7EC08B6
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7EA6C4B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7EAB6D2
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-UMGEditor.dll!0x00000000E7A4E30D
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7E9AEB2
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7E98280
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-UMGEditor.dll!0x00000000E7A2CE04
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7E9953C
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-KismetCompiler.dll!0x00000000E7E98CF1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-UnrealEd.dll!0x00000000EF5F8D18
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-UnrealEd.dll!0x00000000EF5BBF22
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F60363B7
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F600F560
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61A47BA
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617488B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6174C7B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F619AEA6
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F62B973A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C7286
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C74D8
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61759E1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6049378
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6047EAC
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6047D28
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F600F36A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61A47BA
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617488B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6174C7B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F619AEA6
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F62B973A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C7286
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C74D8
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61759E1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6049378
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F60480BE
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6047D28
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F600F36A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F601798A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F60486A5
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F600F463
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61A47BA
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617488B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6174C7B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F619AEA6
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F62B973A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C7286
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C74D8
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61759E1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6049378
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F60480BE
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6047D28
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F600F36A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61A47BA
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617488B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6174C7B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F619AEA6
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F62B973A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C7286
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C74D8
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61C5F29
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61759E1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6049378
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F60480BE
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6047D28
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F600F36A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61A47BA
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617488B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F61999F1
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F617381E
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F6174C7B
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F619AEA6
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: UE4Editor-CoreUObject.dll!0x00000000F62B973A
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error:
UATHelper: Packaging (Android (PVRTC)): Cook: LogWindows:Error: end: stack for UAT
UATHelper: Packaging (Android (PVRTC)): CommandUtils.Run: Run: Took 257,701026s to run UE4Editor-Cmd.exe, ExitCode=3
UATHelper: Packaging (Android (PVRTC)): Project.Cook: Cook failed. Deleting cooked data.
UATHelper: Packaging (Android (PVRTC)): Program.Main: ERROR: AutomationTool terminated with exception: AutomationTool.AutomationException: Cook failed. ---> AutomationTool.CommandletException: BUILD FAILED: Failed while running Cook for D:\Unreal Projects\SkateProject 4.16\SkateProject.uproject; see log C:\Users\\AppData\Roaming\Unreal Engine\Automation
Tool\Logs\D+Programs+Epic+Games+UE_4.16\Cook-2017.05.27-00.01.21.txt
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.CommandUtils.RunCommandlet(FileReference ProjectName, String UE4Exe, String Commandlet, String Parameters)
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.CommandUtils.CookCommandlet(FileReference ProjectName, String UE4Exe, String[] Maps, String[] Dirs, String InternationalizationPreset, String[] CulturesToCook, String TargetPlatform, String Parameters)
UATHelper: Packaging (Android (PVRTC)): at Project.Cook(ProjectParams Params)
UATHelper: Packaging (Android (PVRTC)): --- End of inner exception stack trace ---
UATHelper: Packaging (Android (PVRTC)): at Project.Cook(ProjectParams Params)
UATHelper: Packaging (Android (PVRTC)): at BuildCookRun.DoBuildCookRun(ProjectParams Params)
UATHelper: Packaging (Android (PVRTC)): at BuildCookRun.ExecuteBuild()
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.BuildCommand.Execute()
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.Automation.Execute(List`1 CommandsToExecute, CaselessDictionary`1 Commands)
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.Automation.Process(String[] Arguments)
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.Program.MainProc(Object Param)
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.InternalUtils.RunSingleInstance(Func`2 Main, Object Param)
UATHelper: Packaging (Android (PVRTC)): at AutomationTool.Program.Main()
UATHelper: Packaging (Android (PVRTC)): Program.Main: AutomationTool exiting with ExitCode=25 (Error_UnknownCookFailure)
UATHelper: Packaging (Android (PVRTC)): BUILD FAILED
PackagingResults:Error: Error Unknown Cook Failure